A "connected" house, (where there are sensors in every room measuring how many people are there and computers deciding if the lights need to be on, and if the heat should be raised, and should the shades be drawn, and should thesecurity system be on and all kind of other operations of a house), many shailos will have to be asked as to how to program the system for shabbos and yom tov.
If this seems farfetched, in todays houses shabbos problems can include: automatic lights outside and inside, the light in the refridgerator, a filter on the water supply (borer)
Also if you build a deck/porch, care should be taken that it is allowed to carry from the house to the deck. This is applicable to areas that do not have a city/neighborhood eruv.
A place to wash netilas yodayim near/in the dining room and sukka (I believe the shiur is 10 amos) because of shinui makom problems.
If the house is in yerushlayim and you're planning for the future: A large area on ground level - for your pesach seder; separate areas for food that has kedusha (maaser sheni/korbonos); no porches overhanging reshus harabim because of tuma problems